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Onion/garlic/leek (Allium) - (Vegetables)

List of diseases:

Ascomycota (other orders)
Ascomycota - Dothideomycetes
Ascomycota - Leotiomycetes
Ascomycota - Sordariomycetes
Bacteria
Basidiomycota
Other fungal-like organisms
Other plant diseases
Plant parasitic nematodes
Plant viruses

(Detailed information on all pests, diseases and weeds can be found in the downloadable Excel files)
click on a pest/disease/weed to display a list of relevant publications

Ascomycota (other orders):

Aspergillus europaeus
Aspergillus flavus (plant/storage disease)
Aspergillus niger
Aspergillus ochraceus
Aspergillus parvisclerotigenus
Kluyveromyces marxianus
Penicillium allii
Penicillium expansum
Penicillium glabrum
Penicillium hirsutum
Penicillium polonicum

Ascomycota - Dothideomycetes:

Alternaria alternata
Alternaria burnsii
Alternaria embellisia
Alternaria palandui
Alternaria porri
Ascochyta allii-cepae
Ascochyta lobikii
Cercospora apii
Septoria allii
Setophoma terrestris
Stemphylium botryosum
Stemphylium eturmiunum
Stemphylium solani
Stemphylium vesicarium

Ascomycota - Leotiomycetes:

Botrytis aclada
Botrytis allii
Botrytis byssoidea
Botrytis cinerea
Botrytis porri
Botrytis sinoallii
Botrytis squamosa
Leveillula taurica
Sclerotinia sclerotiorum
Stromatinia cepivora

Ascomycota - Sordariomycetes:

Clonostachys rosea
Colletotrichum circinans
Colletotrichum coccodes
Colletotrichum fructicola
Colletotrichum gloeosporioides
Colletotrichum nymphaeae
Colletotrichum scovillei
Colletotrichum siamense
Colletotrichum spaethianum
Colletotrichum tamarilloi
Colletotrichum theobromicola
Colletotrichum truncatum
Fusarium (genus)
Fusarium acuminatum
Fusarium avenaceum
Fusarium brachygibbosum
Fusarium culmorum
Fusarium fujikuroi
Fusarium oxysporum
Fusarium oxysporum f.sp. cepae
Fusarium proliferatum
Fusarium redolens
Fusarium thapsinum
Fusarium tricinctum
Fusarium verticillioides
Gliomastix cerealis
Neocosmospora falciformis
Neocosmospora solani
Verticillium dahliae

Bacteria:

Acidovorax avenae
Bacillus amyloliquefaciens
Burkholderia cenocepacia
Burkholderia cepacia
Burkholderia gladioli
Dickeya (genus)
Dickeya fangzhongdai
Enterobacter cloacae
Erwinia persicina
Erwinia rhapontici
Pantoea agglomerans
Pantoea allii
Pantoea ananatis
Pantoea dispersa
Pantoea stewartii
Pectobacterium carotovorum
Pectobacterium wasabiae
Pseudomonas aeruginosa (plant disease)
Pseudomonas coronafaciens
Pseudomonas marginalis
Pseudomonas salomonii
Pseudomonas syringae
Pseudomonas syringae pv. allii
Pseudomonas syringae pv. alliifistulosi
Pseudomonas syringae pv. porri
Pseudomonas syringae pv. syringae
Pseudomonas viridiflava
Xanthomonas (genus)
Xanthomonas axonopodis
Xanthomonas axonopodis pv. allii
Xanthomonas campestris

Basidiomycota:

Athelia rolfsii
Macruropyxis fulva
Melampsora allii-populina
Puccinia allii
Puccinia mixta
Puccinia porri
Puccinia tuberosa
Rhizoctonia AG-A
Rhizoctonia AG-B
Rhizoctonia AG-E
Rhizoctonia AG-K
Rhizoctonia AG-U
Rhizoctonia solani
Urocystis magica
Waitea circinata

Other fungal-like organisms:

Globisporangium heterothallicum
Globisporangium irregulare
Globisporangium paroecandrum
Globisporangium sylvaticum
Globisporangium violae
Peronospora destructor
Phytophthora cryptogea
Phytophthora nicotianae
Phytophthora palmivora
Phytophthora porri
Pythium myriotylum

Other plant diseases:

16SrI phytoplasma group
16SrIII phytoplasma group
16SrVII phytoplasma group
16SrXII phytoplasma group
Garlic decline
Phytoplasma asteris
Phytoplasma solani
Phytoplasma trifolii

Plant parasitic nematodes:

Aphelenchoides blastophthorus
Ditylenchus destructor
Ditylenchus dipsaci
Helicotylenchus dihystera
Helicotylenchus labiatus
Meloidogyne (genus)
Meloidogyne arenaria
Meloidogyne chitwoodi
Meloidogyne graminicola
Meloidogyne hapla
Meloidogyne incognita
Meloidogyne javanica
Nanidorus minor
Paratrichodorus allius
Pratylenchus crenatus
Pratylenchus neglectus
Pratylenchus penetrans
Pratylenchus thornei
Pratylenchus vulnus
Scutellonema cavenessi
Xiphinema pachtaicum

Plant viruses:

Allium virus X
Artichoke yellow ringspot virus
Cucumber mosaic virus
Garlic common latent virus
Garlic mite-borne filamentous virus
Garlic virus A
Garlic virus B
Garlic virus C
Garlic virus D
Garlic virus E
Garlic virus X
Garlic yellow stripe associated virus
Groundnut bud necrosis virus
Impatiens necrotic spot virus
Iris yellow spot virus
Leek white stripe virus
Leek yellow stripe virus
Lettuce necrotic yellows virus
Milk vetch dwarf virus
Onion mite-borne latent virus
Onion yellow dwarf virus
Phasey bean mild yellows virus
Scallion mosaic virus
Scallion virus X
Shallot latent virus
Shallot virus X
Shallot yellow stripe virus
Tobacco mosaic virus
Tobacco streak virus
Tomato black ring virus
Tomato spotted wilt virus
Turnip mosaic virus
Turnip yellows virus