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U.S.A. (SE)

List of diseases:

Ascomycota (other orders)
Ascomycota - Dothideomycetes
Ascomycota - Leotiomycetes
Ascomycota - Sordariomycetes
Bacteria
Basidiomycota
Other fungal-like organisms
Other plant diseases
Plant parasitic nematodes
Plant viruses

(Detailed information on all pests, diseases and weeds can be found in the downloadable Excel files)
click on a pest/disease/weed to display a list of relevant publications

Ascomycota (other orders):

Aristastoma (genus)
Aspergillus flavus (plant/storage disease)
Aspergillus niger
Aspergillus nomius
Aspergillus parasiticus
Aspergillus tamarii
Caliciopsis pinea
Cordana musae
Geastrumia polystigmatis
Geosmithia morbida
Geosmithia obscura
Geotrichum candidum
Leptodontidium elatius
Neoscytalidium dimidiatum
Peltaster fructicola
Penicillium citrinum
Penicillium solitum
Stenocarpella macrospora
Stenocarpella maydis
Talaromyces funiculosus

Ascomycota - Dothideomycetes:

Alternaria alternata
Alternaria citri
Alternaria cucumerina
Alternaria dauci
Alternaria japonica
Alternaria linariae
Alternaria longipes
Alternaria solani
Alternaria tenuissima
Alternaria zinniae
Bipolaris cactivora
Bipolaris cookei
Bipolaris drechsleri
Bipolaris gigantea
Bipolaris maydis
Bipolaris oryzae
Bipolaris sacchari
Bipolaris setariae
Bipolaris sorokiniana
Bipolaris stenospila
Bipolaris yamadae
Bipolaris zeicola
Boeremia exigua
Botryosphaeria dothidea
Cercospora richardiicola
Cercospora sojina
Cercospora zeae-maydis
Cladosporium oxysporum
Cladosporium tenuissimum
Cladosporium variabile
Corynespora cassiicola
Corynespora torulosa
Curvularia lunata
Curvularia pseudobrachyspora
Curvularia spicifera
Didymella pinodella
Diplodia corticola
Diplodia quercivora
Diplodia sapinea
Diplodia scrobiculata
Diplodia seriata
Dothiorella dominicana
Elsinoë ampelina
Elsinoë fawcettii
Elsinoë perseae
Exserohilum rostratum
Exserohilum turcicum
Greeneria uvicola
Houjia yanglingensis
Lasiodiplodia brasiliensis
Lasiodiplodia citricola
Lasiodiplodia gilanensis
Lasiodiplodia iraniensis
Lasiodiplodia theobromae
Lecanosticta acicola
Macrophomina phaseolina
Neofusicoccum mediterraneum
Neofusicoccum parvum
Neofusicoccum ribis
Nothopassalora personata
Ophiosphaerella agrostidis
Ophiosphaerella herpotricha
Ophiosphaerella korrae
Ophiosphaerella narmari
Parastagonospora nodorum
Passalora arachidicola
Passalora sequoiae
Phaeosphaeria maydis
Phyllosticta capitalensis
Phyllosticta citricarpa
Plenodomus biglobosus
Plenodomus lingam
Pseudocercospora brachypus
Pseudocercospora fijiensis
Pseudocercospora lythracearum
Pseudocercospora musae
Pseudocercospora pancratii
Pseudocercosporella inconspicua
Pseudopithomyces chartarum
Rhizosphaera kalkhoffii
Septoria albopunctata
Septoria lycopersici
Septoria steviae
Setophoma terrestris
Sphaerulina musiva
Stagonosporopsis caricae
Stagonosporopsis citrulli
Stagonosporopsis cucurbitacearum
Stemphylium solani
Stigmina lautii
Teratosphaeria epicoccoides
Uwebraunia commune
Venturia carpophila
Venturia effusa
Venturia inaequalis
Zasmidium citri-griseum

Ascomycota - Leotiomycetes:

Acrosporium (anamorphic genus)
Amphobotrys ricini
Blumeria graminis
Blumeriella jaapii
Botrytis caroliniana
Botrytis cinerea
Botrytis fragariae
Botrytis mali
Canavirgella banfieldii
Ciborinia camelliae
Clarireedia homoeocarpa
Clarireedia jacksonii
Clarireedia monteithiana
Diplocarpon rosae
Erysiphe abbreviata
Erysiphe australiana
Erysiphe elevata
Erysiphe heraclei
Erysiphe necator
Erysiphe pulchra
Golovinomyces ambrosiae
Golovinomyces cichoracearum
Golovinomyces magnicellulatus
Golovinomyces orontii
Golovinomyces spadiceus
Monilinia fructicola
Monilinia johnsonii
Monilinia laxa
Monilinia vaccinii-corymbosi
Phyllactinia corylea
Phyllactinia guttata
Pilidium lythri
Podosphaera aphanis
Podosphaera fusca
Podosphaera macularis
Podosphaera physocarpi
Podosphaera xanthii
Pseudoidium neolycopersici
Sclerotinia minor
Sclerotinia sclerotiorum

Ascomycota - Sordariomycetes:

Anisogramma anomala
Berkeleyomyces basicola
Bretziella fagacearum
Calonectria colhounii
Calonectria ilicicola
Calonectria pseudonaviculata
Calonectria spathiphylli
Ceratocystis fimbriata
Ceratocystis platani
Chrysoporthe cubensis
Claviceps paspali
Claviceps purpurea
Cocoicola californica
Colletotrichum acutatum
Colletotrichum axonopodi
Colletotrichum boninense
Colletotrichum camelliae
Colletotrichum capsici
Colletotrichum cereale
Colletotrichum chlorophyti
Colletotrichum cordylinicola
Colletotrichum destructivum
Colletotrichum dracaenophilum
Colletotrichum eleusines
Colletotrichum fioriniae
Colletotrichum fructicola
Colletotrichum gloeosporioides
Colletotrichum graminicola
Colletotrichum hanaui
Colletotrichum higginsianum
Colletotrichum liriopes
Colletotrichum lupini
Colletotrichum nymphaeae
Colletotrichum orbiculare
Colletotrichum scovillei
Colletotrichum siamense
Colletotrichum simmondsii
Colletotrichum sublineola
Colletotrichum theobromicola
Colletotrichum truncatum
Coniella granati
Coryneum japonicum
Cryphonectria parasitica
Cylindrocarpon (anamorphic genus)
Cytospora leucostoma
Diaporthe amygdali
Diaporthe aspalathi
Diaporthe citri
Diaporthe phaseolorum
Diatractium cordianum
Discula destructiva
Dwiroopa punicae
Epichloë coenophiala
Fusarium acuminatum
Fusarium avenaceum
Fusarium callistephi
Fusarium chlamydosporum
Fusarium circinatum
Fusarium commune
Fusarium crown and root rot
Fusarium equiseti
Fusarium gossypinum
Fusarium graminearum
Fusarium hostae
Fusarium incarnatum
Fusarium lacertarum
Fusarium languescens
Fusarium mangiferae
Fusarium oxysporum
Fusarium oxysporum f.sp. basilici
Fusarium oxysporum f.sp. canariensis
Fusarium oxysporum f.sp. conglutinans
Fusarium oxysporum f.sp. lactucae
Fusarium oxysporum f.sp. melonis
Fusarium oxysporum f.sp. niveum
Fusarium oxysporum f.sp. palmarum
Fusarium proliferatum
Fusarium pseudonygamai
Fusarium subglutinans
Fusarium torreyae
Fusarium tricinctum
Fusarium verticillioides
Gaeumannomyces graminicola
Gaeumannomyces graminis
Gregatothecium humicola
Grosmannia alacris
Grosmannia huntii
Grosmannia serpens
Harringtonia lauricola
Leptographium lundbergii
Leptographium procerum
Leptographium terebrantis
Magnaporthiopsis poae
Microthia coccolobae
Microthia havanensis
Neocosmospora bataticola
Neocosmospora floridana
Neocosmospora haematococca
Neocosmospora solani
Neocosmospora vasinfecta
Neopestalotiopsis rosae
Nigrospora oryzae
Nigrospora sphaerica
Ophiodothella angustissima
Ophiognomonia clavigignenti-juglandacearum
Ophiostoma minus
Panama disease of banana
Paramyrothecium foliicola
Paramyrothecium roridum
Pestalotiopsis mangiferae
Phaeoacremonium inflatipes
Phomopsis (anamorphic genus)
Phyllachora maydis
Plectosphaerella cucumerina
Pseudonectria foliicola
Pseudopestalotiopsis (genus)
Pyricularia oryzae
Raffaelea (anamorphic genus)
Sarocladium oryzae
Sirococcus tsugae
Soybean sudden death syndrome
Thyronectria austroamericana
Thyronectria balsamea
Trichoderma atroviride
Trichoderma harzianum
Verticillium alboatrum
Verticillium dahliae

Bacteria:

Acidovorax avenae
Acidovorax citrulli
Burkholderia cepacia
Clavibacter sepedonicus
Dickeya (genus)
Dickeya chrysanthemi
Dickeya dadantii
Erwinia amylovora
Erwinia tracheiphila
Herbaspirillum (genus)
Leifsonia xyli
Liberibacter asiaticus
Pantoea agglomerans
Pantoea ananatis
Pantoea stewartii
Pectobacterium aroidearum
Pectobacterium brasiliense
Pectobacterium carotovorum
Pseudomonas amygdali
Pseudomonas cannabina
Pseudomonas cichorii
Pseudomonas floridensis
Pseudomonas mediterranea
Pseudomonas syringae
Pseudomonas syringae pv. aptata
Pseudomonas syringae pv. glycinea
Pseudomonas syringae pv. lachrymans
Pseudomonas syringae pv. maculicola
Pseudomonas syringae pv. syringae
Pseudomonas syringae pv. tomato
Pseudomonas viridiflava
Ralstonia pseudosolanacearum
Ralstonia solanacearum
Rhizorhapis suberifaciens
Robbsia andropogonis
Serratia marcescens (plant pathogen)
Xanthomonas (genus)
Xanthomonas albilineans
Xanthomonas alfalfae
Xanthomonas arboricola pv. juglandis
Xanthomonas arboricola pv. pruni
Xanthomonas axonopodis
Xanthomonas axonopodis pv. manihotis
Xanthomonas campestris pv. armoraciae
Xanthomonas campestris pv. campestris
Xanthomonas campestris pv. citrumelo
Xanthomonas campestris pv. raphani
Xanthomonas campestris pv. vesicatoria
Xanthomonas campestris pv. vitians
Xanthomonas campestris pv. zinniae
Xanthomonas citri
Xanthomonas citri subsp. malvacearum
Xanthomonas cucurbitae
Xanthomonas euvesicatoria
Xanthomonas fragariae
Xanthomonas hederae
Xanthomonas hortorum pv. pelargonii
Xanthomonas phaseoli pv. dieffenbachiae
Xanthomonas translucens
Xanthomonas vesicatoria
Xylella fastidiosa

Basidiomycota:

Armillaria (genus)
Armillaria gallica
Armillaria mellea
Athelia rolfsii
Austropuccinia psidii
Binucleate Rhizoctonia
Ceratobasidium cereale
Coleosporium helianthi
Conidiosporomyces ayresii
Cronartium quercuum
Desarmillaria tabescens
Exobasidium maculosum
Exobasidium vaccinii
Flavodon subulatus
Fomes fomentarius
Fomitopsis pinicola
Ganoderma applanatum
Ganoderma australe
Ganoderma lobatum
Ganoderma lucidum
Ganoderma sessile
Ganoderma zonatum
Gymnosporangium clavipes
Gymnosporangium juniperi-virginianae
Heterobasidion annosum
Heterobasidion irregulare
Inonotus rickii
Insolibasidium deformans
Itersonilia perplexans
Kuehneola uredinis
Laetiporus sulphureus
Limonomyces roseipellis
Melampsora medusae
Mycosarcoma maydis
Phakopsora pachyrhizi
Phellinus (genus)
Puccinia arachidis
Puccinia coronata
Puccinia emaculata
Puccinia graminis
Puccinia hemerocallidis
Puccinia kuehnii
Puccinia melanocephala
Puccinia nakanishikii
Puccinia novopanici
Puccinia polysora
Puccinia sorghi
Puccinia striiformis
Puccinia substriata
Puccinia triticina
Rhizoctonia AG-E
Rhizoctonia AG-F
Rhizoctonia AG-G
Rhizoctonia AG-R
Rhizoctonia solani
Schizophyllum commune
Schizopora (genus)
Tilletia indica
Tilletia walkeri
Trametes cervina
Trametes hirsuta
Trametes versicolor
Trichaptum abietinum
Uredo manilensis
Uromyces transversalis
Waitea circinata

Other fungal-like organisms:

Choanephora cucurbitarum
Gilbertella persicaria
Globisporangium irregulare
Globisporangium rostratum
Globisporangium spinosum
Globisporangium splendens
Globisporangium sylvaticum
Globisporangium ultimum
Hyaloperonospora camelinae
Hyaloperonospora parasitica
Peronospora (genus)
Peronospora belbahrii
Peronospora destructor
Peronospora effusa
Peronospora tabacina
Phytophthora (genus)
Phytophthora cactorum
Phytophthora cambivora
Phytophthora capsici
Phytophthora caryae
Phytophthora cinnamomi
Phytophthora citricola
Phytophthora citrophthora
Phytophthora cryptogea
Phytophthora drechsleri
Phytophthora gonapodyides
Phytophthora heveae
Phytophthora hydropathica
Phytophthora infestans
Phytophthora inundata
Phytophthora megasperma
Phytophthora nicotianae
Phytophthora niederhauserii
Phytophthora palmivora
Phytophthora parasitica
Phytophthora pini
Phytophthora syringae
Phytophthora tropicalis
Phytopythium helicoides
Phytopythium vexans
Plasmodiophora brassicae
Plasmopara obducens
Plasmopara viticola
Pseudoperonospora cubensis
Pythium aphanidermatum
Pythium deliense
Pythium graminicola
Pythium myriotylum
Pythium oopapillum
Pythium pachycaule
Pythium torulosum
Pythium vanterpoolii
Pythium volutum
Rhizopus stolonifer

Other plant diseases:

16SrI phytoplasma group
16SrIV phytoplasma group
16SrV phytoplasma group
Avocado sunblotch viroid
Cephaleuros virescens
Citrus blight
Grapevine yellow speckle viroid 1
Hop stunt viroid
Peach latent mosaic viroid
Phytoplasma aculeata
Phytoplasma asteris
Phytoplasma palmae
Phytoplasma phoenicium
Potato spindle tuber viroid

Plant parasitic nematodes:

Aphelenchoides besseyi
Aphelenchoides fragariae
Aphelenchoides pseudobesseyi
Aphelenchus avenae
Belonolaimus longicaudatus
Ditylenchus dipsaci
Dolichodorus heterocephalus
Ficophagus laevigatus
Globodera tabacum
Helicotylenchus (genus)
Helicotylenchus dihystera
Helicotylenchus pseudorobustus
Hemicriconemoides (genus)
Heterodera glycines
Hoplolaimus (genus)
Hoplolaimus columbus
Hoplolaimus galeatus
Hoplolaimus magnistylus
Hoplolaimus stephanus
Longidorus (genus)
Longidorus africanus
Longidorus americanum
Longidorus crassus
Longidorus orientalis
Meloidogyne (genus)
Meloidogyne arenaria
Meloidogyne enterolobii
Meloidogyne floridensis
Meloidogyne graminicola
Meloidogyne graminis
Meloidogyne hapla
Meloidogyne haplanaria
Meloidogyne hispanica
Meloidogyne incognita
Meloidogyne javanica
Meloidogyne marylandi
Meloidogyne partityla
Meloidogyne trifoliophila
Mesocriconema (genus)
Mesocriconema ornatum
Mesocriconema xenoplax
Nanidorus minor
Paratrichodorus allius
Paratrichodorus pachydermus
Pratylenchus (genus)
Pratylenchus bolivianus
Pratylenchus brachyurus
Pratylenchus coffeae
Pratylenchus hippeastri
Pratylenchus neglectus
Pratylenchus penetrans
Pratylenchus pseudocoffeae
Pratylenchus scribneri
Pratylenchus vulnus
Pratylenchus zeae
Quinisulcius acutus
Radopholus similis
Rotylenchulus (genus)
Rotylenchulus reniformis
Schistonchus (genus)
Scutellonema brachyurus
Scutellonema bradys
Scutellonema cavenessi
Trichodorus obtusus
Tylenchorhynchus (genus)
Tylenchorhynchus claytoni
Tylenchulus palustris
Tylenchulus semipenetrans
Xiphinema (genus)
Xiphinema chambersi

Plant viruses:

Alfalfa mosaic virus
Alternanthera mosaic virus
Angelonia flower break virus
Apium virus Y
Apple stem grooving virus
Banana streak virus
Barley yellow dwarf virus MAV
Barley yellow dwarf virus PAV
Barley yellow dwarf viruses
Bean common mosaic virus
Bean golden yellow mosaic virus
Bean pod mottle virus
Bean yellow mosaic virus
Beet pseudo-yellows virus
Begonia flower breaking virus
Bidens mottle virus
Black raspberry necrosis virus
Blackberry yellow vein associated virus
Blueberry latent virus
Blueberry mosaic associated ophiovirus
Blueberry necrotic ring blotch virus
Blueberry red ringspot virus
Brome mosaic virus
Cabbage leaf curl virus
Cacao mild mosaic virus
Calibrachoa mottle virus
Catharanthus mosaic virus
Cereal yellow dwarf virus RPV
Cherry rusty mottle associated virus
Citrus leprosis virus C
Citrus leprosis virus N
Citrus psorosis virus
Citrus tristeza virus
Citrus variegation virus
Clover yellow vein virus
Colombian datura virus
Cotton leafroll dwarf virus
Cowpea aphid-borne mosaic virus
Cucumber mosaic virus
Cucurbit chlorotic yellows virus
Cucurbit leaf crumple virus
Cucurbit yellow stunting disorder virus
Dasheen mosaic virus
Dicliptera yellow mottle virus
Dioscorea mosaic virus
Fig badnavirus-1
Frangipani mosaic virus
Furovirus (genus)
Grapevine fleck virus
Grapevine leafroll-associated virus 2
Grapevine leafroll-associated virus 3
Grapevine red blotch virus
Grapevine rupestris stem pitting-associated virus
Grapevine Syrah virus-1
Grapevine vein clearing virus
Grapevine virus B
Grapevine virus E
Groundnut ringspot virus
Helleborus net necrosis virus
Hibiscus latent Fort Pierce virus
High Plains wheat mosaic virus
Hosta virus X
Impatiens necrotic spot virus
Iris yellow spot virus
Jatropha mosaic virus
Ligustrum necrotic ringspot virus
Macroptilium yellow mosaic Florida virus
Maize chlorotic dwarf virus
Maize fine streak virus
Orchid fleck dichorhavirus
Papaya ringspot virus
Papaya ringspot virus W
Passiflora chlorosis virus
Passiflora latent virus
Passion fruit mosaic virus
Peanut mottle virus
Peanut stripe virus
Peanut stunt virus
Pepino mosaic virus
Pepper mild mottle virus
Pepper mottle virus
Potato leafroll virus
Potato virus A
Potato virus S
Potato virus X
Potato virus Y
Prune dwarf virus
Prunus necrotic ringspot virus
Rose rosette emaravirus
Sida golden mosaic Florida virus
Sida golden mosaic virus
Soil-borne wheat mosaic virus
Soybean mosaic virus
Soybean vein necrosis virus
Squash vein yellowing virus
Sugarcane bacilliform virus
Sugarcane mosaic virus
Sugarcane striate virus
Sugarcane yellow leaf virus
Sweet potato chlorotic stunt virus
Sweet potato feathery mottle virus
Sweet potato leaf curl South Carolina virus
Sweet potato leaf curl virus
Sweet potato virus 2
Sweet potato virus G
Tobacco etch virus
Tobacco mosaic virus
Tobacco ringspot virus
Tobacco streak virus
Tomato brown rugose fruit virus
Tomato chlorosis virus
Tomato chlorotic spot virus
Tomato infectious chlorosis virus
Tomato mosaic virus
Tomato mottle mosaic virus
Tomato mottle virus
Tomato necrotic spot virus
Tomato necrotic streak virus
Tomato ringspot virus
Tomato spotted wilt virus
Tomato yellow leaf curl virus
Turnip mosaic virus
Turnip yellows virus
Watermelon crinkle leaf-associated virus 1
Watermelon crinkle leaf-associated virus 2
Watermelon leaf mottle virus
Watermelon mosaic virus
Wheat spindle streak mosaic virus
Wheat streak mosaic virus
Zucchini tigre mosaic virus
Zucchini yellow mosaic virus